Summary statistics for the 1.0 release (Lotgi1):
|
Nuclear Genome Assembly
|
Lotgi1
|
|
Nuclear genome size (Mbp)
|
359.5
|
|
Sequencing read coverage depth
|
8.87x
|
|
Reported # of contigs
|
20,146
|
|
# of nuclear scaffolds
|
4,475
|
|
# of nuclear scaffolds >2 Kbp
|
2,631
|
|
Nuclear scaffold N/L50
|
51/1.87 Mbp
|
|
Three largest Scaffolds (Mbp)
|
9.4
7.1
6.4
|
|
Gene Models
|
Lotgi11
|
|
length (bp) of:
|
average
|
|
gene
|
5,234
|
|
transcript
|
1,286
|
|
exon
|
213
|
|
intron
|
787
|
|
description:
|
|
|
protein length (aa)
|
378
|
|
exons per gene
|
6.0
|
|
# of gene models
|
23,851
|
[1] FilteredModels Version1.0 gene model track
|
ESTs
|
Data set
|
# sequences total
|
# mapped to genome
|
# not mapped to genome
|
% mapped to genome
|
|
EST clusters
|
EstClusters_naClusterCr705LottiaJgi20060727
|
38,599
|
35,832
|
2,767
|
93%
|
|
ESTs
|
Ests_naEstLottiaJgi20060727
|
252,091
|
231,940
|
20,151
|
92%
|